I have seen this issue in one other post on this forum, but unfortunately it did not mention if a solution had been found. Whenever I try to load my own data (Siemens) into the Osprey GUI it errors on the load data step. I have tried it without the waterfile and/or T1 as well.
I am using a Siemens scanner and the data I have got from it is .IMA. It does take single averages and saves them seperately for the single voxel spectrum, but it also creates an average of these 80 files into one .IMA file.
I have attached the spectro, water, and T1 file, as well as my LogFile and matlab JobFile (test). I have tried CoReg via Gannet before, but it does not seem to register my voxels on the right spot. I have tried to play around with the rotations as mentioned in certain documentation, but whereas it does indeed rotate the position, it is still not close to the actual spot. My main goal is to obtain the tissue percentages within the voxels to correct for them during the quantification. When I saw Osprey also has a quantification step I hoped I would be able to use this as well, it seems like a great tool to exist in the world of spectroscopy.
The voxel position of attached data should be in the vermis (the thin middle part within the cerebellum) and I have placed the voxels on the obtained T1 scan (in sag/tra/cor dimensions) during scanning. If you have any ideas on how to adjust Osprey/Gannet to be able to read this data I would be very grateful!