Hi,
Following situation: Siemens Scanner, 3D-CSI. We load the data into matlab, do a lot of preprocessing and write out the important voxels slice by slice into a JMRUI-Txt file. Than we run jmrui in batch mode (linux) to quantify with amares.
This worked fine under jMRUI3 (and I think also with 5 - not sure there).
Under jMRUI7 we get a lot of error messages and it seems jMRUI tries to load the data as GE.
Starting the jMRUI7-GUI and going to file->open as-> “Text file” works fine and jMRUI can read in the whole slice - just not in batch mode.
If anybody has a solution for us or can suggest another file format we should save our preprocessed spectra slicewise in matlab, we would be very gratefull.
Thanks for any hints,
Wolfgang
PS: Thats how our preprocessed data looks like:
jMRUI Data Textfile
Filename: 31P_wwf_CSI_jMRUI_S03.txt
PointsInDataset: 1024
DatasetsInFile: 192
SamplingInterval: 5.00E-1
ZeroOrderPhase: 0E0
BeginTime: 0E0
TransmitterFrequency: 4.9872E7
MagneticField: 3E0
TypeOfNucleus: 0E0
NameOfPatient: AG0301
DateOfExperiment: 20080513
Spectrometer: PrismaFit
AdditionalInfo: NeuroImaging
SignalNames: 31P_3dCSI.dcm;