MRspa/ LCmodel - setting up pipeline

Hi all,

I’m very new to MRS analysis and am/ will be using MRspa + LCmodel to analyse my single voxel 7T data. Could someone help me set up a pipeline so I don’t have to use the GUI for every data set? I tried figuring it out myself, but couldn’t really wrap my head around it…

Thank you!

I don’t think there’s much regular MRspa support around here, but I’m tagging @Dinesh.

If you want to fit data with LCModel (and if you’ll allow me a shameless plug), feel free to also take a look at our Osprey toolbox, which can pre-process your data, ship it off to LCModel for fitting, and re-import the fit results to do quantification.

If you want to bypass the GUI option, this is doable. Message me what you want to do.
Dinesh