I am trying to reproduce voxel visualization for GE SVS in OpenMRSLab. I am a bit confused due to some space rotations I can’t handle in my mind. It looks like GE anatomical scan is stored in sagittal in contrast to Siemens T1, which is an axial one in the tutorial. The same for the voxel coordinates… I am not sure about the orientation.
Dear Ben, please give me some support. I attach my notebook but I would appreciate some other examples as well.
Finally, I would like to ask the community to share Your thoughts about voxel-to-image conversion. Do You know some tools, which could simply create a mask? For Siemens I used my own code released on NITRC, but it became more complicated when we have to deal with also GE etc. data…
Looking forward to hearing from You