Hello,
I just installed the most recent version of Osprey (2.9.6) and used the GUI to create my job file. I am using a HERMES sequence and specify that in the job file but after the job is setup and I import my data, the GUI displays it as a HERCULES sequence. After data import I saved the MRSCont and checked my job file and it in fact has seqType set to “HERMES”. I checked the MRSCont.flags field and isHERMES is 1 and isHERCULES is 0.
I’m not sure if this is just an issue with what the GUI is displaying or what.
Here is my job file content minus some of the data file paths for brevity:
{
“seqType”: “HERMES”,
“editTarget”: [“GABA”,“GSH”, “EtOH”],
“dataScenario”: “invivo”,
“MM3coModel”: “3to2MM”,
“FWHMMM3co”: “14”,
“SpecReg”: “RobSpecReg”,
“SubSpecAlignment”: “L2Norm”,
“UnstableWater”: “0”,
“saveLCM”: “0”,
“savejMRUI”: “0”,
“saveVendor”: “0”,
“saveNII”: “0”,
“savePDF”: “0”,
“method”: “Osprey”,
“ECCmetab”: “1”,
“ECCmm”: “1”,
“includeMetabs”: [“Asc”,“Asp”,“Cr”,“CrCH2”,“EtOH”,“GABA”,“GPC”,“GSH”,“Gln”,“Glu”,“mI”,“Lac”,“NAA”,“NAAG”,“PCh”,“PCr”,“PE”,“sI”,“Tau”
,“MM09”,“MM12”,“MM14”,“MM17”,“MM20”,“Lip09”,“Lip13”,“Lip20”],
“style”: “Separate”,
“lolim_range”: “0.5”,
“uplim_range”: “4.0”,
“lolim_rangew”: “2.0”,
“uplim_rangew”: “7.4”,
“bLineKnotSpace”: “0.4”,
“fitMM”: “1”,
“files”: [“/blue/vabfmc/data/archive/Lamb_BT/sub-015/mrs/sub-015_acq-hermes_nuc-1H_vox-frontal_svs.dat”,
“/blue/vabfmc/data/archive/Lamb_BT/sub-016/mrs/sub-016_acq-hermes_nuc-1H_vox-frontal_svs.dat”,
“/blue/vabfmc/data/archive/Lamb_BT/sub-022/mrs/sub-022_acq-hermes_nuc-1H_vox-frontal_svs.dat”,
“/blue/vabfmc/data/archive/Lamb_BT/sub-025/mrs/sub-025_acq-hermes_nuc-1H_vox-frontal_svs.dat”,
“/blue/vabfmc/data/archive/Lamb_BT/sub-027/mrs/sub-027_acq-hermes_nuc-1H_vox-frontal_svs.dat”,
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“/blue/vabfmc/data/archive/Lamb_BT/sub-048/mrs/sub-048_acq-hermes_nuc-1H_vox-frontal_svs.dat”],
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“/blue/vabfmc/data/archive/Lamb_BT/sub-046/mrs/sub-046_acq-hermes_nuc-1H_type-ref_vox-frontal_svs.dat”,
“/blue/vabfmc/data/archive/Lamb_BT/sub-048/mrs/sub-048_acq-hermes_nuc-1H_type-ref_vox-frontal_svs.dat”],
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“file_stat”: [“”],
“outputFolder”: [“/blue/vabfmc/data/working/robert727/cda2/results/mrs/osprey_20250530/frontal”]