Dear Osprey Developers,
I hope you are well!
I’ve come across an issue when using OspreyLoad to load TWIX files, both in the command line and in the GUI, and I was hoping you might be able to help me. Our data is from a Siemens Connectom scanner so this could have something to do with it. I tried viewing the .dat file in MATLAB and it looked different to the .dat files from the TWIX example data provided with Osprey - not sure if this is related.
The error message I get is:
>> Osprey
Timestamp March 09, 2022 13:05:43 Osprey 1.1.0 OspreyGUI
Warning: "/cubric/software/spm.versions/spm12/external/fieldtrip/external/stats/finv.m" not found in path.
> In rmpath (line 71)
In osp_Toolbox_Check (line 84)
In Osprey (line 19)
Warning: MATLAB has disabled some advanced graphics rendering features by switching to software OpenGL. For more information,
click here.
Continue with loading new job, overwriting existing job.
/home/sapcm15/gitlab/ALSPAC_analysis/MRS/jobTwix_ALSPAC.m
Timestamp March 09, 2022 13:07:26 Osprey 1.1.0
Timestamp March 09, 2022 13:07:27 Osprey 1.1.0 OspreyGUI
Timestamp March 09, 2022 13:07:51 Osprey 1.1.0 OspreyLoad
Loading raw data from dataset 1 out of 1 total datasets...
Software version: VD (!?)
Reader version: 1496740353 (UTC: 06-Jun-2017 09:12:33)
Scan 1/1, read all mdhs:
65.8 MB read in 1 s
ans =
0
single RAID file detected.
Software version: VD (!?)
Reader version: 1496740353 (UTC: 06-Jun-2017 09:12:33)
Scan 1/1, read all mdhs:
4.7 MB read in 0 s
ans =
0
single RAID file detected.
... done.
Elapsed time 4.856217 seconds
Array indices must be positive integers or logical values.
Error in OspreyLoad (line 168)
for pp = 1:raw.sz(raw.dims.extras)
Error in osp_onLoad (line 33)
MRSCont = OspreyLoad(MRSCont);
Error while evaluating UIControl Callback.
Please let me know if there is anything you need from me.
Thank you so much,
Carolyn